| P.1 |
83996 |
2020-11-03 |
Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutaions with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-fin |
23403(43546,99.87%); 5648(43522,99.82%); 241(43497,99.76%); 3037(43495,99.76%); 25088(43495,99.76%); 14408(43491,99.75%); 21614(43470,99.70%); 23063(43469,99.70%); 21638(43456,99.67%); 23525(43429,99.61%); 28512(43427,99.60%); 23012(43410,99.56%); 24642(43408,99.56%); 26149(43393,99.52%); 733(43387,99.51%); 6613(43355,99.44%); 3828(43334,99.39%); 6319(43327,99.37%); 21621(43236,99.16%); 13860(43226,99.14%) |
United States(25334,30.16%); Brazil(24229,28.85%); Canada(14739,17.55%); Chile(4046,4.82%); Mexico(2609,3.11%); Belgium(1784,2.12%); Argentina(1180,1.40%); Spain(1092,1.30%); Peru(1071,1.28%); France(1058,1.26%); Luxembourg(999,1.19%); Germany(996,1.19%); Colombia(655,0.78%); Netherlands(619,0.74%); Italy(606,0.72%); Trinidad and Tobago(357,0.43%); Suriname(345,0.41%); Switzerland(257,0.31%); Ecuador(244,0.29%); United Kingdom(231,0.28%)
|
| P.1.1 |
4041 |
2020-12-19 |
Alias of B.1.1.28.1.1, European lineage in Italy and Germany |
3037(1437,100.56%); 241(1436,100.49%); 23403(1436,100.49%); 14408(1433,100.28%); 23063(1427,99.86%); 28512(1426,99.79%); 23525(1421,99.44%); 5648(1420,99.37%); 2749(1417,99.16%); 13860(1416,99.09%); 733(1415,99.02%); 12778(1415,99.02%); 6613(1414,98.95%); 23012(1414,98.95%); 21638(1414,98.95%); 3828(1413,98.88%); 26149(1413,98.88%); 21621(1411,98.74%); 28167(1407,98.46%); 17259(1406,98.39%) |
Italy(1893,46.84%); United States(754,18.66%); Germany(593,14.67%); Canada(206,5.10%); Brazil(141,3.49%); Belgium(139,3.44%); Mexico(40,0.99%); Luxembourg(40,0.99%); Chile(35,0.87%); France(28,0.69%); Colombia(22,0.54%); Poland(18,0.45%); Switzerland(16,0.40%); Suriname(13,0.32%); United Kingdom(12,0.30%); Spain(10,0.25%); Trinidad and Tobago(10,0.25%); Argentina(9,0.22%); Malta(8,0.20%); Netherlands(8,0.20%)
|
| P.1.10 |
3168 |
N/A |
N/A |
14408(1429,99.93%); 23403(1426,99.72%); 5648(1423,99.51%); 6319(1423,99.51%); 11287(1423,99.51%); 28882(1423,99.51%); 28883(1423,99.51%); 28881(1422,99.44%); 17259(1421,99.37%); 28512(1421,99.37%); 21638(1421,99.37%); 25088(1421,99.37%); 3828(1419,99.23%); 23012(1419,99.23%); 23063(1419,99.23%); 21614(1419,99.23%); 26149(1419,99.23%); 733(1418,99.16%); 241(1417,99.09%); 24642(1417,99.09%) |
United States(2799,88.35%); Brazil(197,6.22%); Belgium(65,2.05%); Canada(23,0.73%); Mexico(12,0.38%); Germany(10,0.32%); Spain(8,0.25%); Colombia(8,0.25%); Chile(7,0.22%); Trinidad and Tobago(5,0.16%); Ecuador(5,0.16%); Haiti(4,0.13%); Italy(3,0.09%); France(3,0.09%); Argentina(3,0.09%); Israel(2,0.06%); Honduras(2,0.06%); Costa Rica(2,0.06%); Netherlands(2,0.06%); Dominican Republic(1,0.03%)
|
| P.1.10.1 |
71 |
N/A |
N/A |
12778(66,100.00%); 21974(66,100.00%); 25088(66,100.00%); 28881(66,100.00%); 3037(66,100.00%); 13329(66,100.00%); 26149(66,100.00%); 28882(66,100.00%); 3828(66,100.00%); 13860(66,100.00%); 22812(66,100.00%); 26873(66,100.00%); 28883(66,100.00%); 4300(66,100.00%); 14408(66,100.00%); 23012(66,100.00%); 28167(66,100.00%); 241(66,100.00%); 17259(66,100.00%); 23063(66,100.00%) |
Netherlands(71,100.00%)
|
| P.1.10.2 |
24 |
N/A |
N/A |
3037(14,100.00%); 12778(14,100.00%); 21638(14,100.00%); 25088(14,100.00%); 28882(14,100.00%); 3828(14,100.00%); 13329(14,100.00%); 21974(14,100.00%); 26149(14,100.00%); 28883(14,100.00%); 4033(14,100.00%); 13860(14,100.00%); 22132(14,100.00%); 28167(14,100.00%); 29726(14,100.00%); 5648(14,100.00%); 14408(14,100.00%); 23012(14,100.00%); 28262(14,100.00%); 241(14,100.00%) |
Mexico(24,100.00%)
|
| P.1.11 |
54 |
N/A |
N/A |
25088(38,100.00%); 5648(38,100.00%); 6319(38,100.00%); 14408(38,100.00%); 17259(38,100.00%); 241(38,100.00%); 21614(38,100.00%); 23403(38,100.00%); 733(38,100.00%); 21621(38,100.00%); 2749(38,100.00%); 21638(38,100.00%); 23604(38,100.00%); 3037(38,100.00%); 22132(38,100.00%); 24642(38,100.00%); 28881(38,100.00%); 3828(37,97.37%); 12778(37,97.37%); 28882(37,97.37%) |
Brazil(46,85.19%); United States(6,11.11%); Mexico(2,3.70%)
|
| P.1.2 |
1726 |
N/A |
N/A |
14408(849,100.00%); 3037(847,99.76%); 3828(846,99.65%); 26149(846,99.65%); 28881(846,99.65%); 5648(846,99.65%); 23063(846,99.65%); 28882(846,99.65%); 23403(846,99.65%); 28883(846,99.65%); 23525(846,99.65%); 28512(846,99.65%); 24642(846,99.65%); 25088(846,99.65%); 13860(845,99.53%); 17259(845,99.53%); 733(845,99.53%); 2749(844,99.41%); 23012(844,99.41%); 241(844,99.41%) |
United States(844,48.90%); Brazil(553,32.04%); Argentina(144,8.34%); Chile(38,2.20%); Spain(38,2.20%); Netherlands(28,1.62%); Mexico(23,1.33%); Canada(8,0.46%); France(7,0.41%); Belgium(5,0.29%); Switzerland(4,0.23%); Costa Rica(4,0.23%); Turkey(3,0.17%); Germany(3,0.17%); Peru(3,0.17%); Portugal(3,0.17%); Colombia(2,0.12%); Norway(2,0.12%); Montenegro(2,0.12%); Paraguay(2,0.12%)
|
| P.1.3 |
217 |
N/A |
N/A |
12778(102,100.00%); 21638(102,100.00%); 23525(102,100.00%); 28512(102,100.00%); 3828(102,100.00%); 28877(102,100.00%); 5648(102,100.00%); 13860(102,100.00%); 24642(102,100.00%); 28878(102,100.00%); 6319(102,100.00%); 14408(102,100.00%); 25088(102,100.00%); 28881(102,100.00%); 241(102,100.00%); 22812(102,100.00%); 26149(102,100.00%); 28882(102,100.00%); 6613(102,100.00%); 23012(102,100.00%) |
United States(82,37.79%); Brazil(80,36.87%); Chile(33,15.21%); France(10,4.61%); Canada(5,2.30%); Peru(2,0.92%); Germany(1,0.46%); Argentina(1,0.46%); Ecuador(1,0.46%); Belgium(1,0.46%); Uruguay(1,0.46%)
|
| P.1.4 |
1050 |
N/A |
N/A |
2749(829,100.00%); 21614(829,100.00%); 23403(829,100.00%); 28883(829,100.00%); 3037(829,100.00%); 12778(829,100.00%); 21621(829,100.00%); 23525(829,100.00%); 21638(829,100.00%); 23599(829,100.00%); 3828(829,100.00%); 13860(829,100.00%); 5648(829,100.00%); 14408(829,100.00%); 22132(829,100.00%); 25088(829,100.00%); 28877(829,100.00%); 241(829,100.00%); 6319(829,100.00%); 23012(829,100.00%) |
Brazil(604,57.52%); Peru(342,32.57%); United States(34,3.24%); Switzerland(27,2.57%); Chile(22,2.10%); Costa Rica(7,0.67%); Canada(3,0.29%); Italy(3,0.29%); Colombia(2,0.19%); Ecuador(2,0.19%); Argentina(1,0.10%); Norway(1,0.10%); Mexico(1,0.10%); South Korea(1,0.10%)
|
| P.1.5 |
12 |
N/A |
N/A |
3117(12,100.00%); 13860(12,100.00%); 21974(12,100.00%); 24642(12,100.00%); 28881(12,100.00%); 3828(12,100.00%); 14408(12,100.00%); 22132(12,100.00%); 25088(12,100.00%); 28882(12,100.00%); 5648(12,100.00%); 22812(12,100.00%); 26149(12,100.00%); 28883(12,100.00%); 6319(12,100.00%); 17259(12,100.00%); 23012(12,100.00%); 28167(12,100.00%); 241(12,100.00%); 6613(12,100.00%) |
Brazil(12,100.00%)
|
| P.1.6 |
305 |
N/A |
N/A |
3828(267,100.00%); 13860(267,100.00%); 22132(267,100.00%); 25088(267,100.00%); 28881(267,100.00%); 5648(267,100.00%); 14408(267,100.00%); 22812(267,100.00%); 26149(267,100.00%); 28882(267,100.00%); 6319(267,100.00%); 15714(267,100.00%); 23012(267,100.00%); 28883(267,100.00%); 6613(267,100.00%); 17259(267,100.00%); 23063(267,100.00%); 28167(267,100.00%); 29834(267,100.00%); 241(267,100.00%) |
Brazil(303,99.34%); Sweden(2,0.66%)
|
| P.1.8 |
180 |
N/A |
N/A |
12778(110,100.00%); 21638(110,100.00%); 23525(110,100.00%); 3828(110,100.00%); 13860(110,100.00%); 23604(110,100.00%); 4040(110,100.00%); 14408(110,100.00%); 24642(110,100.00%); 28167(110,100.00%); 5648(110,100.00%); 22812(110,100.00%); 25088(110,100.00%); 28262(110,100.00%); 241(110,100.00%); 6319(110,100.00%); 17259(110,100.00%); 25266(110,100.00%); 28512(110,100.00%); 592(110,100.00%) |
Brazil(169,93.89%); France(3,1.67%); Sweden(2,1.11%); United States(2,1.11%); United Kingdom(2,1.11%); Mexico(1,0.56%); Spain(1,0.56%)
|
| P.1.9 |
278 |
N/A |
N/A |
3828(168,100.00%); 26149(168,100.00%); 5648(168,100.00%); 23012(168,100.00%); 23063(168,100.00%); 28167(168,100.00%); 6613(168,100.00%); 23403(168,100.00%); 28512(168,100.00%); 241(168,100.00%); 21614(168,100.00%); 23525(168,100.00%); 733(168,100.00%); 12778(168,100.00%); 21621(168,100.00%); 23587(168,100.00%); 13860(168,100.00%); 21638(168,100.00%); 24642(168,100.00%); 28881(168,100.00%) |
Brazil(234,84.17%); United States(17,6.12%); Chile(8,2.88%); Canada(5,1.80%); Argentina(3,1.08%); Paraguay(3,1.08%); Mexico(2,0.72%); Belgium(2,0.72%); Spain(2,0.72%); Japan(1,0.36%); Portugal(1,0.36%)
|